PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g002620.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HD-ZIP
Protein Properties Length: 200aa    MW: 22721.6 Da    PI: 8.5082
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g002620.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-1864118256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++t+eq + Le+ F++n++++ +++e LAk+l L  rq+ vWFqNrRa+ k
  Csa09g002620.1  64 RKKLRLTREQSRLLEDSFRQNHTLNPKQKEALAKHLMLRPRQIEVWFQNRRARSK 118
                     78889************************************************98 PP

2HD-ZIP_I/II118.73.1e-3864152189
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                     +kk+rl++eq++lLE+sF+++++L+p++K++la++L l+prq++vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeLr+
  Csa09g002620.1  64 RKKLRLTREQSRLLEDSFRQNHTLNPKQKEALAKHLMLRPRQIEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNHRLHREVEELRA 152
                     69*************************************************************************************94 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.7E-1945118IPR009057Homeodomain-like
SuperFamilySSF466891.45E-1847121IPR009057Homeodomain-like
PROSITE profilePS5007117.13560120IPR001356Homeobox domain
SMARTSM003892.4E-1762124IPR001356Homeobox domain
CDDcd000861.09E-1563121No hitNo description
PfamPF000466.4E-1664118IPR001356Homeobox domain
PROSITE patternPS00027095118IPR017970Homeobox, conserved site
SMARTSM003407.0E-22120163IPR003106Leucine zipper, homeobox-associated
PfamPF021831.4E-9120154IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MEILPENSSN LDLTISVPGF SSSPPSDEGS GGGREQLKLD MNRLPSSEDG DDEEFSHDGS  60
APPRKKLRLT REQSRLLEDS FRQNHTLNPK QKEALAKHLM LRPRQIEVWF QNRRARSKLK  120
QTEMECEYLK RWFGSLTEQN HRLHREVEEL RAMKVGPPTV NSASSLTMCP RCERVTTPAS  180
PASMAVPARK KFPPQERDD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112120RRARSKLKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4311810.0AJ431181.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper (Athb17 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010424912.11e-146PREDICTED: homeobox-leucine zipper protein ATHB-17 isoform X3
SwissprotQ8S9N61e-132ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17
TrEMBLD7LLR21e-136D7LLR2_ARALL; Putative uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_50000311e-135(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48902747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.11e-119homeobox-leucine zipper protein 17